Texas A&M Supercomputing Facility Texas A&M University Texas A&M Supercomputing Facility

Software

Last updated on February 6, 2014 3:41 PM

We currently have many commercial and freeware packages installed on our supercomputers.

Online documentation and links to the vendor's website are available to TAMU computers and to computers using TAMU's VPN.

Requests to use restricted software should be emailed to the SC helpdesk.. Please also consult our Restricted Software Policy for more information.

The software acquisition and licensing policy for our facility is here.

Software Topic FAQ Vendor Eos Workstations
Abaqus Structural Mechanics Yes SIMULA 6.9EF
6.12
6.12
ABySS Bioinformatics   Genome Sciences Centre 1.3.5
ALLPATHS-LG Bioinformatics   Broad Institute 45288
ANSYS Academic Research Structural Mechanics Yes ANSYS Inc. 12.1
13.0
15.0
ANSYS CFX Academic Research Computational Fluid Dynamics Yes ANSYS Inc. 12.1
13.0
15.0
ANSYS Fluent Computational Fluid Dynamics Yes ANSYS Inc. 12.1
13.0
15.0
ANSYS ICEM CFD Educational Package Pre- and Post-Processing Yes ANSYS Inc. 12.1
13.0
15.0
ANSYS TurboGrid Computational Fluid Dynamics   ANSYS 13.0
15.0
BioPerl Bioinformatics   BioPerl 1.6.1
BLAST Bioinformatics   NCBI 2.2.24
Boost Libraries   Boost 1.47
1.50
Bowtie Bioinformatics   John Hopkins University 0.12.8
1.0.0
Burrows-Wheeler Aligner (BWA) Bioinfomatics   0.7.3a
CD-HIT Bioinformatics   Sanford-Burnham Medical Research Institute 4.5.4
4.6.1-1
CMake Development   2.8.8
2.8.10.2
2.8.12.1
Community Climate System Model (CCSM) Climate Modeling   UCAR 3.0
3.0.1-beta14
Community Earth System Model (CESM) Climate Modeling   UCAR 1.0
1.0.4
CUDA Toolkit GPU Programming   NVIDIA 4.0.17
4.2.9
deal.II Libraries Yes deal.II 7.1.0
EMBOSS Molecular Biology   EMBOSS 6.2.0
Ensight Post-Processing   Computational Engineering International (CEI) 9.2.1c
Exonerate Bioinformatics   European Bioinformatics Institute 2.2
FASTX-Toolkit Bioinformatics   CSHL 0.0.13
Ferret Visualization   Pacific Marine Environmental Laboratory 6.64
FFTW Mathematics   FFTW 2.1.5
3.2.2
FreeBayes Bioinformatics   Department of Biology at Boston College 0.96
Gambit Computational Fluid Dynamics Yes ANSYS Inc. 2.4.6
Gaussian Computational Chemistry   Gaussian Inc. G09 A02
G09 B01
G09 D01
GCC, GNU Compiler Collection Compilers   GNU 4.1.2
4.5.1
4.7.2
4.8.2
Geant4 Physics   CERN 4.9.6
GMAP-GNSAP Bioinformatics   2012-03-12
Gnuplot Visualization Yes GNU 4.4.3
4.6.0
GotoBLAS Mathematics   TACC, Univ. of Texas 1.13
Grace Visualization   Grace 5.1.22 5.1.23
Gromacs Molecular Dynamics   gromacs.org 4.5.1
4.5.5
4.6.1
4.6.3
4.6.5
GSL Mathematics   GNU 1.15
HDF5 Library   HDFGroup 1.8.4p1
1.8.9
HyperWorks Structural Mechanics Yes Altair Engineering 12.0
Intel Compilers Compilers, Development Tools, Libraries   Intel 11.1.072
11.1.073
12.1.5.339
13.1.2.183
14.0.0.080
Intel Debugger Debuggers   Intel 11.1
12.1
Intel Math Kernel Library (MKL) Libraries   Intel 10.2.6.038
10.3.11.339
Intel MPI Libraries   Intel 3.2.2.006
4.0.0.028
4.0.3.008
Intel Performance Primitives Libraries   Intel 6.1.6.063
Intel Threading Building Blocks Libraries   Intel 2.2
3.0
Intel Trace Analyzer and Collector Debugging   Intel 8.0.0.011
Intel VTune Performance Analyzer Performance Analysis Tools (Intel64)   Intel VTune Performance Analyzer 9.1.8
LAMMPS Molecular Dynamics   Sandia National Laboratories 4Dec2011
4Jul2012
20Jan2014
27Nov2013
lpsolve Linear Programming   5.5.2
LS-DYNA Structural Mechanics Yes Livermore Software Technology Corp. 971-R6.1.2
R7.0.1
LS-OPT Structural Mechanics Yes Livermore Software Technology Corp. 4.1-60603
4.1-60830
5.0-84950
LS-PREPOST Structural Mechanics   Livermore Software Technology Corp. 3.1
3.2
4.1
LS-TASC Structural Mechanics   Livermore Software Technology Corp. 3.0
MAGMA Mathematics   ICL UTK 1.1.0
Mathematica Mathematics Yes Wolfram Research 7.0.1
9.0.1
Matlab Mathematics Yes The Mathworks 2010b
2012b
2013a
2013a
Maui Job Scheduler   Adaptive Computing 3.3.1
Migrate Bioinformatics   SCS, Florida State Univ. 3.2.16
MIT Photonic-Bands (MPB)   MIT 1.4.2
mpiBLAST Bioinformatics   mpiBLAST 1.6.0
MSVAR Bioinformatics   University of Reading 1.3
MVAPICH2 MPI Libraries (MPICH2)   Network-based Compuitng Lab at Ohio State University 1.7
1.8
NAMD Molecular Dynamics   TCB & PPL @ Univ. of Illinois at Urbana-Champaign 2.7
2.9
2.9
NCAR Command Language (NCL)   CISL @ NCAR 5.2.1
6.1.2
Ncview Visualization   Scripps Institution of Oceanography 2.1.1 2.1.2
netCDF Libraries   Unidata 4.1.1
4.1.3
netCDF Operator (NCO)   NCO 4.0.4
4.2.0
NWChem Computational Chemistry   EMSL at PNNL 6.0
Open MPI MPI Libraries Yes The Open MPI Project 1.4.3
1.6.0
OpenFOAM Computational Fluid Dynamics   OpenFOAM 1.7
2.1.1
2.2.0
2.2.1
2.2.1
OpenSees Earthquake Simulations   PEER at Berkeley 2.3.0
p4est Libraries   p4est.org 0.3.4
PAPI Profiling   Univ. of Kentucky 4.2.0
Parallel netCDF Libraries   MCS @ Argonne National Laboratory 1.2.0
ParaView Visualization   ParaView 3.12
4.0.1
Perl Programming   Perl.com 5.8.8 5.16.3
PETSc Large Scale Computational Science Yes Argonne National Laboratory, Univesity of Chicago 3.2-p7
3.3-p1
PGI Compilers Compilers   The Portland Group 12.3
12.8
13.1
13.2
Picard Bioinformatics   1.87
Program Database Toolkit (PDT) Libraries   University of Oregon 3.19-1
3.19-2
Quantum ESPRESSO Electronic Calculations and Material Modeling   DEMOCRITOS 5.0.2
R Statistics   The R Foundation 2.11
2.12
2.15
3.0.1
3.0.2
R Studio Statistics   RStudio 0.97
RepeatMasker Bioinformatics   Institute for Systems Biology open-3.2.9
ROOT Libraries   CERN 5.34.10
5.34.13
5.34.13
Sage Mathematics   Sage 4.7.2
SALOME Numerical Simulations   SALOME 5.1.5
SAMtools Bioinformatics   SAMtools 0.1.7a
0.1.19
SAS Analytics   SAS 9.3
SOAPdenovo Bioinformatics   Beijing Genomics Insitute 1.05
Sparsehash Libraries   Google 2.02
Stacks Bioinformatics   Univ. of Oregon 0.998
STAR-CCM+ Computational Fluid Dynamics Yes CD-adapco 5.02
6.04
7.04
8.02
8.04
8.06
STAR-CD Computational Fluid Dynamics Yes CD-adapco 4.12
STAR-Design Computational Fluid Dynamics   CD-adapco
TAU Profiling   Univ. of Oregon 2.22.2-1
2.22.2-2
TORQUE Resource Manager Resource Manager   Adaptive Computing 2.5.7
Trans-ABySS Bioinformatics   Genome Science Center 1.4.4
Trilinos Mathematics   Sandia National Laboratories 10.4.2
Trinity Bioinformatics   Broad Institute and the Hebrew University of Jerusalem r2012-10-05
r2013-02-25
r2013-08-14
r2013-11-10
UDUNITS Libraries   UCAR 2.1.14
2.1.24
VisIt Visualization   LLNL 2.3.2
2.6.1
Visual Molecular Dynamics (VMD) Molecular Dynamics   Theoretical and Computational Biophysics Group at UIUC 1.9.1-1
WRF Climate Modeling   UCAR 3.2