Software
We currently have many commercial and freeware packages installed on our supercomputers.
Online documentation and links to the vendor's website are available to TAMU computers and to computers using TAMU's VPN.
Requests to use restricted software should be emailed to the SC helpdesk.. Please also consult our Restricted Software Policy for more information.
The software acquisition and licensing policy for our facility is here.
| Software | Topic | FAQ | Vendor | Hydra | Eos | Workstations |
|---|---|---|---|---|---|---|
| Abaqus | Structural Mechanics |  |
SIMULA | 6.6 6.7 6.8 6.9EF |
6.9EF 6.12 |
6.6 6.7 6.8 6.12 |
| ANSYS Academic Teaching | Structural Mechanics | |
ANSYS Inc. | 12.0 13.0 |
12.1 13.0 |
|
| ANSYS CFX Academic Research | Computational Fluid Dynamics | |
ANSYS Inc. | 12.0 13.0 |
12.1 13.0 |
|
| ANSYS Fluent | Computational Fluid Dynamics | |
ANSYS Inc. | 12.0 13.0 |
12.1 13.0 |
|
| ANSYS ICEM CFD Educational Package | Pre- and Post-Processing | |
ANSYS Inc. | 12.0 13.0 |
12.1 13.0 |
|
| ATLAS | Mathematics | ATLAS | 3.6 | |||
| BioPerl | Bioinformatics | BioPerl | 1.6.1 | |||
| BLAST | Bioinformatics | NCBI | 2.2.24 | |||
| Boost | Libraries | Boost | 1.37 | 1.43 1.47 |
||
| Bowtie | Bioinformatics | John Hopkins University | 0.12.8 1.0.0 |
|||
| Community Climate System Model (CCSM) | Climate Modeling | UCAR | 3.0 3.0.1-beta14 |
3.0 3.0.1-beta14 |
||
| Community Earth System Model (CESM) | Climate Modeling | UCAR | 1.0 1.0.4 |
|||
| CUDA Toolkit | GPU Programming | NVIDIA | 4.0.17 4.2.9 |
|||
| deal.II | Libraries | |
deal.II | 7.1.0 | ||
| EMBOSS | Molecular Biology | EMBOSS | 6.0.1 | 6.2.0 | ||
| Ensight | Post-Processing | Computational Engineering International (CEI) | 9.2.1c | 8.0 | ||
| Exonerate | Bioinformatics | European Bioinformatics Institute | 2.2 | |||
| FASTX-Toolkit | Bioinformatics | CSHL | 0.0.13 | |||
| Ferret | Visualization | Pacific Marine Environmental Laboratory | 5.41 | 6.64 | ||
| FFTW | Mathematics | FFTW | 2.1.5 3.1.3 3.2.1 |
2.1.5 3.2.2 |
||
| FreeBayes | Bioinformatics | Department of Biology at Boston College | 0.96 | |||
| Gambit | Computational Fluid Dynamics | |
ANSYS Inc. | 2.3.16 2.4.6 |
2.4.6 | 2.3.16 |
| Gaussian | Computational Chemistry | Gaussian Inc. | G03 D02 G03 E01 G09 A02 G09 B01 |
G09 A02 G09 B01 |
||
| GCC, GNU Compiler Collection | Compilers | GNU | 4.2.3 4.3.1 4.4.5 4.5.2 |
4.1.2 4.5.1 |
4.1.2 | |
| Gnuplot | Visualization | |
GNU | 4.2.3 | 4.4.3 4.6.0 |
|
| GotoBLAS | Mathematics | TACC, Univ. of Texas | |
|||
| Grace | Visualization | Grace | 5.1.20 | 5.1.22 | ||
| Gromacs | Molecular Dynamics | gromacs.org | 4.0 | 4.5.1 4.5.5 4.6.1 |
||
| GSL | Mathematics | GNU | 1.11 | |||
| HDF5 | Library | HDFGroup | 1.8.1 | 1.8.4p1 1.8.9 |
||
| HyperWorks | Structural Mechanics | |
Altair Engineering | 9.0 10.0 |
12.0 | |
| IMa 2.0 | Bioinformatics | Hey Lab, Rutgers Univ. | |
|||
| Integrated Performance Monitoring (IPM) 0.921 | Profiling | IPM | 0.921 | |||
| Intel Compilers | Compilers, Development Tools, Libraries | Intel | 11.1.072 11.1.073 12.1.5.339 |
|||
| Intel Debugger | Debuggers | Intel | 11.1 12.1 |
|||
| Intel Math Kernel Library (MKL) | Libraries | Intel | 10.2.6.038 10.3.11.339 |
|||
| Intel MPI | Libraries | Intel | 3.2.2.006 4.0.0.028 4.0.3.008 |
|||
| Intel Performance Primitives | Libraries | Intel | 6.1.6.063 | |||
| Intel Threading Building Blocks | Libraries | Intel | 2.2 3.0 |
|||
| Intel Trace Analyzer and Collector | Debugging | Intel | 8.0.0.011 | |||
| Intel VTune Performance Analyzer | Performance Analysis Tools (Intel64) | Intel VTune Performance Analyzer | 9.1.8 | |||
| JBIG-KIT 1.6 | Libraries | JBIG-KIT | |
|||
| LAMMPS | Molecular Dynamics | Sandia National Laboratories | 03072009 03272009 05192009 06062009 10142009 05102010 |
4Dec2011 4Jul2012 |
||
| LoadLeveler | Resource Manager | IBM | 3.4.3 | |||
| LS-DYNA | Structural Mechanics | |
Livermore Software Technology Corp. | 971-R4.2 971-R4.2.1 |
971-R5.0 971-R5.1.1 |
|
| LS-OPT | Structural Mechanics | |
Livermore Software Technology Corp. | 3.2 | 4.1-60603 4.1-60830 |
|
| LS-PREPOST | Structural Mechanics | Livermore Software Technology Corp. | 2.1 | 3.1 3.2 |
||
| MAGMA | Mathematics | ICL UTK | 1.1.0 | |||
| Mathematica | Mathematics | |
Wolfram Research | 7.0.1 9.0.1 |
||
| Matlab | Mathematics | |
The Mathworks | 2010b 2012b 2013a |
2008a 2009b |
|
| Matlab 6.5 R13 | Mathematics | |
The Mathworks | Login Nodes Only | ||
| Maui | Job Scheduler | Adaptive Computing | 3.3.1 | |||
| Migrate | Bioinformatics | SCS, Florida State Univ. | 2.1.3 3.0.3 |
3.2.16 | ||
| MIT Photonic-Bands (MPB) | MIT | 1.4.2 | ||||
| mpiBLAST | Bioinformatics | mpiBLAST | 1.6.0 | |||
| MSVAR | Bioinformatics | University of Reading | 1.3 | |||
| MVAPICH2 | MPI Libraries (MPICH2) | Network-based Compuitng Lab at Ohio State University | 1.7 1.8 |
|||
| NAMD | Molecular Dynamics | TCB & PPL @ Univ. of Illinois at Urbana-Champaign | 2.6 | 2.7 | ||
| NCAR Command Language (NCL) | CISL @ NCAR | 5.0.0 5.1.1 |
5.2.1 | |||
| Ncview | Visualization | Scripps Institution of Oceanography | 2.1.1 | |||
| netCDF | Libraries | Unidata | 3.6.1 3.6.2 4.0 |
4.1.1 4.1.3 |
||
| netCDF Operator (NCO) | NCO | 4.0.4 4.2.0 |
||||
| NWChem | Computational Chemistry | EMSL at PNNL | 6.0 | |||
| Open MPI | MPI Libraries | |
The Open MPI Project | 1.4.3 1.6.0 |
||
| OpenFOAM | Computational Fluid Dynamics | OpenFOAM | 1.7 2.1.1 2.3.0 |
|||
| OpenSees | Earthquake Simulations | PEER at Berkeley | 2.3.0 | |||
| p4est | Libraries | p4est.org | 0.3.4 | |||
| PAPI | Profiling | Univ. of Kentucky | 3.5.0 3.6.2 |
4.2.0 | ||
| Parallel netCDF | Libraries | MCS @ Argonne National Laboratory | 1.0.1 | 1.2.0 | ||
| ParaView | Visualization | ParaView | 3.12 | |||
| Perl | Programming | Perl.com | 5.8.2 5.10 |
5.8.8 | 5.8.8 | |
| PETSc | Large Scale Computational Science | |
Argonne National Laboratory, Univesity of Chicago | 3.0.0-p8 | 3.2-p7 3.3-p1 |
|
| PGI Compilers | Compilers | The Portland Group | 12.3 12.8 |
|||
| Quantum ESPRESSO | Electronic Calculations and Material Modeling | DEMOCRITOS | 5.0.2 | |||
| R | Statistics | The R Foundation | 2.7.1 | 2.11 2.12 2.15 |
||
| RepeatMasker | Bioinformatics | Institute for Systems Biology | open-3.2.9 | |||
| RIP4 4.3 | Visualization | UCAR | |
|||
| Sage | Mathematics | Sage | 4.7.2 | |||
| SALOME | Numerical Simulations | SALOME | 5.1.5 | |||
| SAMtools | Bioinformatics | SAMtools | 0.1.7a | |||
| SOAPdenovo | Bioinformatics | Beijing Genomics Insitute | 1.05 | |||
| SPRNG 2.0 | Libraries | Florida State Univ. | |
|||
| Stacks | Bioinformatics | Univ. of Oregon | 0.998 | |||
| STAR-CCM+ | Computational Fluid Dynamics | |
CD-adapco | 5.02 | 6.04 7.04 8.02 |
|
| STAR-CD | Computational Fluid Dynamics | |
CD-adapco | 4.10 | 4.12 | |
| STAR-Design | Computational Fluid Dynamics | CD-adapco | 4.04.015 | |||
| TAU | Profiling | Univ. of Oregon | 2.18 | 2.19.2 2.22.2-1 |
||
| TINKER | Bioinformatics | Univ. of New Mexico | |
|||
| TORQUE Resource Manager | Resource Manager | Adaptive Computing | 2.5.7 | |||
| Totalview | Debugging | TotalView Technologies | 8.6.2-2 | |||
| Trilinos | Mathematics | Sandia National Laboratories | 10.4.2 | |||
| Trinity | Bioinformatics | Broad Institute and the Hebrew University of Jerusalem | r2012-10-05 r2013-02-25 |
|||
| UDUNITS | Libraries | UCAR | 2.1.14 2.1.24 |
|||
| VisIt | Visualization | LLNL | 2.3.2 2.6.1 |
|||
| WRF | Climate Modeling | UCAR | 2.2 | 3.2 |